SNP Profiles matching ICS 8

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
1._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
2._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
3._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
4._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
5._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
6._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
7._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
8._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
9._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
10._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
11._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
12._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
13._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
14._NA_95	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
15._NA_95	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
16._GC-01-122-6-19	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
17._GC-08-168-4-11	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
18._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
19._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
20._PA_81_[PER]	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
21._RUQ_1585	_	AA	GG	CC	_	_	_	TT	_	_	_	_	GG	_
22._RUQ_1460	_	AA	GG	CC	_	_	_	TT	_	_	_	_	GG	_
23._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
1._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
2._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
3._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
4._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
5._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
6._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
7._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
8._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
9._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
10._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
11._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
12._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
13._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
14._NA_95	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
15._NA_95	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
16._GC-01-122-6-19	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
17._GC-08-168-4-11	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
18._ICS_8	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
19._GC-08-054-1-65	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
20._PA_81_[PER]	AA	GG	TT	CC	GG	-	GG	TT	CC	CC	TT	TT	CC	AA
21._RUQ_1585	_	_	_	CC	GG	GG	_	TT	CC	CC	TT	TT	CC	AA
22._RUQ_1460	_	_	_	CC	GG	GG	_	TT	CC	CC	TT	TT	CC	AA
23._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	AC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
1._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
2._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
3._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
4._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
5._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
6._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
7._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
8._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
9._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
10._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
11._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
12._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
13._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
14._NA_95	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
15._NA_95	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
16._GC-01-122-6-19	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
17._GC-08-168-4-11	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
18._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
19._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
20._PA_81_[PER]	GG	AA	CC	AG	-	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
21._RUQ_1585	_	-	CC	AG	CC	AC	CT	GT	AC	_	_	X_X	X_X	X_X
22._RUQ_1460	_	-	CC	AG	CC	AC	CT	GT	AC	_	_	X_X	X_X	X_X
23._ICS_8	AG	AA	CC	AG	_	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X

Input profile: ICS_8

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Mars Center for Cocoa Science, Brazil

Location: 8165 1 > FP

Dapeng Zhang, 2016

1._ICS_8

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 3 > FP

Dapeng Zhang, 2016

2._ICS_8

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 2 > FP

Dapeng Zhang, 2016

3._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 9

Dapeng Zhang, 2016

4._ICS_8

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 8

Dapeng Zhang, 2016

5._ICS_8

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 7

Dapeng Zhang, 2016

6._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._ICS_8 GC-08-054-1-65

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

9._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

10._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

11._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

12._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

13._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

14._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8411 3

Dapeng Zhang, 2016

15._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1619 9 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._NA_95 GC-01-122-6-19

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

17._NA_95 GC-08-168-4-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

18._ICS_8

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 10

Dapeng Zhang, 2016

19._ICS_8 GC-08-054-1-65

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

20._PA_81_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A F527 T2

Dapeng Zhang, 2014

21._CRU_104 RUQ_1585

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

22._CRU_111 RUQ_1460

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

23._ICS_8

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block5

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25